Korea SKKU Morph Server
Sungkyunkwan University

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Query
Normal Mode Analysis Elastic Network Interpolation Normal mode Guided ENI
Database
Normal Mode Analysis Elastic Network Interpolation Normal mode Guided ENI
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Rigid Cluster Generator

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NMA Query

Step: 1 of 4



Guide-Query with PDB ID

1. Select the "PDB ID" radio button
2. Type PDB ID of your interest (e.g., 1AJX, 1HHP)
3. Click on the "NEXT" button to continue

Guide-Query with uploading PDB file

1. Select the "Upload PDB" radio button
2. Press the "Browse" button
3. After choosing the proper PDB file(PDB format ONLY) on the file selection window, click on either "Basic Query" or "Advanced Query" button.

Notice

At the first step, user should provide KOSMOS with either PDB ID or PDB file. Since KOSMOS is only compatible with PDB, please make sure the uploaded file follows the standard PDB format. Otherwise, the simulation cannot proceed.

(e.g. 1AJX, 1HHP, 1LFH)
Query with default settings(Cutoff Distance-12Å for Cα, 24Å for DNA/RNA)

Choose settings for advanced features of KOSMOS

Computational Bioengineering Lab. School of Mechanical Engineering & Department of Nano Science and Technology
Rm 22106. Sungkyunkwan Univ. 300. Chunchun-Dong. Jangan-Gu. 440-746. Korea,
E-mail : qktndn@skku.edu

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